Comparative analysis of deep learning models for cell counting in microalgae samples

Thiviyanathan, Vimal Angela and Ker, Pin Jern and Mohamed, Hassan and Mohd Zaki, Hasan Firdaus and Lee, Hui Jing and Tang, Shirley G.H. and Yu, Kai Ling and Mohd Yasin, Nazlina Haiza (2025) Comparative analysis of deep learning models for cell counting in microalgae samples. Algal Research, 92. pp. 1-12. ISSN 2211-9264

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Abstract

Microalgae have demonstrated outstanding potential across various industries, including pharmaceuticals, biodiesel production, and animal feed, but their widespread adoption remains limited due to challenges in upstream production processes. This research aims to overcome the constraints of traditional microalgae monitoring techniques, where manual cell counting is both tedious and prone to errors, by leveraging deep learning methods to improve the accuracy and efficiency of cell counting. Three object detection models, namely, SSD, Faster R-CNN, and YOLOv8 were evaluated for their effectiveness in microalgae cell counting. These models were specifically selected for their strong potential in accurately detecting a wide range of objects. Among these, YOLOv8 outperformed the others, achieving a maximum F1 score of 0.95, 0.94, 0.97, 0.98, 0.98, and 0.99 for cell count ranges between 0�100, 101�200, 201�300, 301�400, 401�500 and >500 cells, respectively. These findings highlight YOLOv8's effectiveness in accurately detecting and counting microalgae cells with minimal error, as it combines a lightweight design with advanced feature extraction. In comparison, Faster R-CNN struggles with small objects because it relies on a region proposal network, while SSD faces challenges due to its use of default bounding boxes. Therefore, unlike other works that solely focus on cell classification, this research emphasizes the potential of the YOLOv8 model for cell counting, which assists in identifying microalgae growth phases, a crucial factor in determining the optimal harvest time. Since microalgae produce different biomolecules at each growth stage, this information is valuable for optimizing their applications across various industries.

Item Type:	Article (Journal)
Additional Information:	8293/124206
Uncontrolled Keywords:	Object detection, YOLO, SSD, Faster R-CNN, Microalgae detection, Deep learning
Subjects:	T Technology > TK Electrical engineering. Electronics Nuclear engineering > TK7800 Electronics. Computer engineering. Computer hardware. Photoelectronic devices > TK7885 Computer engineering
Kulliyyahs/Centres/Divisions/Institutes (Can select more than one option. Press CONTROL button):	Kulliyyah of Engineering > Department of Mechatronics Engineering Kulliyyah of Engineering
Depositing User:	Dr. Hasan Firdaus Mohd Zaki
Date Deposited:	07 Nov 2025 16:56
Last Modified:	07 Nov 2025 16:56
URI:	http://irep.iium.edu.my/id/eprint/124206

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