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University Structure (45901)
- Ahmad Ibrahim Kulliyyah of Laws (3733)
  - Department of Civil Law (1607)
  - Department of Islamic Law (727)
  - Department of Legal Practice (554)
- Centre for Foundation Studies (185)
- Centre for Islamic Economics (67)
- Centre for Languages and Pre-University Academic Development (CELPAD) (804)
  - Bahasa Melayu Division (14)
  - English Language Division (167)
  - Quranic Language Division (322)
  - Tilawah Al-Quran Divsion (143)
- Centre for Postgraduate Studies (4)
- Harun Hashim Law Centre (2)
- IIUM Breast Centre (3)
- IIUM Graduate School of Management (2)
- IIUM Library (19)
- Kulliyyah of Education (1729)
  - Department of Curriculum & Instruction (112)
  - Department of Educational Psychology & Counseling (44)
  - Department of Language & Literacy (113)
  - Department of Social Foundations & Educational Leadership (50)
- Institute of Islamic Banking & Finance (IIiBF) (907)
- International Institute for Halal Research and Training (INHART) (391)
- International Institute of Islamic Thought and Civilization (ISTAC) (234)
- International Institute of Muslim Unity (IIMU) (3)
- Kulliyyah of Allied Health Sciences (1452)
  - Department of Audiology and Speech-Language Pathology (140)
  - Department of Biomedical Science (Effective:1st July 2011) (485)
  - Department of Diagnostic Imaging and Radiotherapy (155)
  - Department of Nutrition Sciences (274)
  - Department of Optometry and Visual Science (163)
  - Department of Basic Health Sciences (Until June 2011) (56)
  - Department of Physical Rehabilitation Sciences (54)
- Kulliyyah of Architecture and Environmental Design (2972)
  - Department of Applied Arts and Design (237)
  - Department of Architecture (644)
  - Department of Building Technology & Engineering (71)
  - Department of Landscape Architecture (653)
  - Department of Quantity Surveying (242)
  - Department of Urban & Regional Planning (693)
- Kulliyyah of Dentistry (823)
  - Fundamental Dental and Medical Sciences (117)
  - Oral Maxxilofacial Surgery & Oral Diagnosis (49)
  - Paediatric Dentistry, Orthodontics & Dental Public Health (113)
  - Restorative Dentistry (32)
- Kulliyyah of Economics and Management Sciences (3667)
  - Department of Accounting (426)
  - Department of Business Administration (1064)
  - Department of Economics (1180)
  - Department of Finance (414)
- Kulliyyah of Engineering (10642)
  - Department of Biotechnology Engineering (2036)
  - Department of Electrical and Computer Engineering (2364)
  - Department of Manufacturing and Materials Engineering (1657)
  - Department of Mechanical Engineering (1360)
  - Department of Mechatronics Engineering (1203)
  - Department of Science (560)
  - Department of Civil Engineering (96)
- Kulliyyah of Information and Communication Technology (3326)
  - Department of Computer Science (1076)
  - Department of Information System (1139)
  - Department of Library & Information Science (261)
- Kulliyyah of Islamic Revealed Knowledge and Human Sciences (7660)
  - Department of Arabic Language and Literature (1253)
  - Department of Communication (447)
  - Department of English Language & Literature (548)
  - Department of Fiqh and Usul al-Fiqh (854)
  - Department of General Studies (655)
  - Department of History & Civilization (303)
  - Department of Political Science (442)
  - Department of Psychology (346)
  - Department of Qur’an and Sunnah (633)
  - Department of Sociology & Anthropology (320)
  - Department of Usul al-Din and Comparative Religion (686)
  - Department of Fundamental and Inter-Disciplinary Studies (Effective: 5th Feb 2014) (152)
- Kulliyyah of Languages and Management (418)
- Kulliyyah of Medicine (3233)
  - Department of Anaesthesiology & Intensive Care (159)
  - Department of Basic Medical (460)
  - Department of Community Health & Family Medicine (72)
  - Department of Community Medicine (Effective: 1st January 2011) (287)
  - Department of Department of Orthopaedics, Traumatology & Rehabilitation (508)
  - Department of Family Medicine (Effective: 1st January 2011) (413)
  - Department of Internal Medicine (360)
  - Department of Obstetric & Gynecology (172)
  - Department of Ophthalmology (50)
  - Department of Otolaryngology - Head and Neck Surgery (125)
  - Department of Paediatrics (73)
  - Department of Psychiatry (228)
  - Department of Radiology (185)
  - Department of Surgery (234)
  - IIUM Fertility Centre (5)
  - Department of Pathology & Lab Medicine (40)
- Kulliyyah of Nursing (631)
  - Department of Basic Medical Sciences for Nursing (85)
  - Department of Critical Care Nursing (126)
  - Department of Medical Surgical Nursing (98)
  - Department of Professional Nursing Studies (64)
  - Department of Special Care Nursing (80)
- Kulliyyah of Pharmacy (1800)
  - Department of Basic Medical Sciences (180)
  - Department of Pharmaceutical Chemistry (515)
  - Department of Pharmaceutical Technology (603)
  - Department of Pharmacy Practice (292)
- Kulliyyah of Science (3257)
  - Department of Biomedical Science (107)
  - Department of Biotechnology (865)
  - Department of Chemistry (205)
  - Department of Computational and Theoretical Sciences (652)
  - Department of Marine Science (279)
  - Department of Physics (352)
  - Department of Plant Science (95)
  - Institute of Oceanography and Maritime Studies (275)
- Centre for Islamisation (CENTRIS) (3)
- Centre for Malay World & Islamic Civilisation (3)
- Office of the Rector (73)
- Research Management Centre (12)