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University Structure (50664)
- Ahmad Ibrahim Kulliyyah of Laws (4078)
  - Department of Civil Law (1845)
  - Department of Islamic Law (758)
  - Department of Legal Practice (609)
- Centre for Foundation Studies (225)
- Centre for Islamic Economics (74)
- Centre for Languages and Pre-University Academic Development (CELPAD) (881)
  - Bahasa Melayu Division (14)
  - English Language Division (192)
  - Quranic Language Division (339)
  - Tilawah Al-Quran Divsion (176)
- Centre for Postgraduate Studies (4)
- Harun Hashim Law Centre (2)
- IIUM Breast Centre (3)
- IIUM Graduate School of Management (2)
- IIUM Library (27)
- Kulliyyah of Education (1930)
  - Department of Curriculum & Instruction (145)
  - Department of Educational Psychology & Counseling (79)
  - Department of Language & Literacy (175)
  - Department of Social Foundations & Educational Leadership (63)
- Institute of Islamic Banking & Finance (IIiBF) (1117)
- International Institute for Halal Research and Training (INHART) (499)
- International Institute of Islamic Thought and Civilization (ISTAC) (267)
- International Institute of Muslim Unity (IIMU) (4)
- Kulliyyah of Allied Health Sciences (1684)
  - Department of Audiology and Speech-Language Pathology (159)
  - Department of Biomedical Science (Effective:1st July 2011) (533)
  - Department of Diagnostic Imaging and Radiotherapy (162)
  - Department of Nutrition Sciences (332)
  - Department of Optometry and Visual Science (223)
  - Department of Basic Health Sciences (Until June 2011) (57)
  - Department of Physical Rehabilitation Sciences (85)
- Kulliyyah of Architecture and Environmental Design (3264)
  - Department of Applied Arts and Design (280)
  - Department of Architecture (679)
  - Department of Building Technology & Engineering (71)
  - Department of Landscape Architecture (682)
  - Department of Quantity Surveying (260)
  - Department of Urban & Regional Planning (817)
- Kulliyyah of Dentistry (970)
  - Department of Fundamental Dental and Medical Sciences (176)
  - Department of Oral Maxillofacial Surgery and Oral Diagnosis (68)
  - Department of Orthodontics (1)
  - Department of Paediatric Dentistry and Dental Public Health (154)
  - Department of Restorative Dentistry (40)
- Kulliyyah of Economics and Management Sciences (3989)
  - Department of Accounting (478)
  - Department of Business Administration (1149)
  - Department of Economics (1268)
  - Department of Finance (451)
- Kulliyyah of Engineering (11173)
  - Department of Biotechnology Engineering (2150)
  - Department of Electrical and Computer Engineering (2493)
  - Department of Manufacturing and Materials Engineering (1765)
  - Department of Mechanical Engineering (1439)
  - Department of Mechatronics Engineering (1248)
  - Department of Science (589)
  - Department of Civil Engineering (126)
- Kulliyyah of Information and Communication Technology (3542)
  - Department of Computer Science (1150)
  - Department of Information System (1245)
  - Department of Library & Information Science (268)
- Kulliyyah of Islamic Revealed Knowledge and Human Sciences (8624)
  - Department of Arabic Language and Literature (1356)
  - Department of Communication (505)
  - Department of English Language & Literature (621)
  - Department of Fiqh and Usul al-Fiqh (953)
  - Department of General Studies (670)
  - Department of History & Civilization (375)
  - Department of Political Science (515)
  - Department of Psychology (455)
  - Department of Qur’an and Sunnah (751)
  - Department of Sociology & Anthropology (343)
  - Department of Usul al-Din and Comparative Religion (785)
  - Department of Fundamental and Inter-Disciplinary Studies (Effective: 5th Feb 2014) (231)
- Kulliyyah of Languages and Management (575)
- Kulliyyah of Medicine (3740)
  - Department of Anaesthesiology & Intensive Care (185)
  - Department of Basic Medical (628)
  - Department of Community Health & Family Medicine (75)
  - Department of Community Medicine (Effective: 1st January 2011) (330)
  - Department of Department of Orthopaedics, Traumatology & Rehabilitation (549)
  - Department of Family Medicine (Effective: 1st January 2011) (503)
  - Department of Internal Medicine (405)
  - Department of Obstetric & Gynecology (189)
  - Department of Ophthalmology (63)
  - Department of Otolaryngology - Head and Neck Surgery (127)
  - Department of Paediatrics (91)
  - Department of Psychiatry (259)
  - Department of Radiology (202)
  - Department of Surgery (251)
  - IIUM Fertility Centre (5)
  - Department of Pathology & Lab Medicine (85)
- Kulliyyah of Nursing (777)
  - Department of Basic Medical Sciences for Nursing (110)
  - Department of Critical Care Nursing (162)
  - Department of Medical Surgical Nursing (129)
  - Department of Professional Nursing Studies (81)
  - Department of Special Care Nursing (125)
- Kulliyyah of Pharmacy (2003)
  - Department of Basic Medical Sciences (199)
  - Department of Pharmaceutical Chemistry (564)
  - Department of Pharmaceutical Technology (650)
  - Department of Pharmacy Practice (368)
- Kulliyyah of Science (3620)
  - Department of Biomedical Science (109)
  - Department of Biotechnology (923)
  - Department of Chemistry (241)
  - Department of Computational and Theoretical Sciences (674)
  - Department of Marine Science (320)
  - Department of Physics (473)
  - Department of Plant Science (135)
  - Institute of Oceanography and Maritime Studies (294)
- Centre for Islamisation (CENTRIS) (5)
- Centre for Malay World & Islamic Civilisation (4)
- Office of the Rector (87)
- Research Management Centre (17)