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University Structure (51180)
- Ahmad Ibrahim Kulliyyah of Laws (4115)
  - Department of Civil Law (1869)
  - Department of Islamic Law (762)
  - Department of Legal Practice (611)
- Centre for Foundation Studies (231)
- Centre for Islamic Economics (74)
- Centre for Languages and Pre-University Academic Development (CELPAD) (887)
  - Bahasa Melayu Division (14)
  - English Language Division (193)
  - Quranic Language Division (340)
  - Tilawah Al-Quran Divsion (179)
- Centre for Postgraduate Studies (4)
- Harun Hashim Law Centre (2)
- IIUM Breast Centre (3)
- IIUM Graduate School of Management (4)
- IIUM Library (29)
- Kulliyyah of Education (1952)
  - Department of Curriculum & Instruction (147)
  - Department of Educational Psychology & Counseling (86)
  - Department of Language & Literacy (180)
  - Department of Social Foundations & Educational Leadership (63)
- Institute of Islamic Banking & Finance (IIiBF) (1160)
- International Institute for Halal Research and Training (INHART) (510)
- International Institute of Islamic Thought and Civilization (ISTAC) (270)
- International Institute of Muslim Unity (IIMU) (4)
- Kulliyyah of Allied Health Sciences (1725)
  - Department of Audiology and Speech-Language Pathology (167)
  - Department of Biomedical Science (Effective:1st July 2011) (537)
  - Department of Diagnostic Imaging and Radiotherapy (167)
  - Department of Nutrition Sciences (334)
  - Department of Optometry and Visual Science (242)
  - Department of Basic Health Sciences (Until June 2011) (57)
  - Department of Physical Rehabilitation Sciences (87)
- Kulliyyah of Architecture and Environmental Design (3286)
  - Department of Applied Arts and Design (281)
  - Department of Architecture (687)
  - Department of Building Technology & Engineering (71)
  - Department of Landscape Architecture (687)
  - Department of Quantity Surveying (260)
  - Department of Urban & Regional Planning (821)
- Kulliyyah of Dentistry (1001)
  - Department of Fundamental Dental and Medical Sciences (181)
  - Department of Oral Maxillofacial Surgery and Oral Diagnosis (70)
  - Department of Orthodontics (1)
  - Department of Paediatric Dentistry and Dental Public Health (165)
  - Department of Restorative Dentistry (42)
- Kulliyyah of Economics and Management Sciences (4015)
  - Department of Accounting (478)
  - Department of Business Administration (1162)
  - Department of Economics (1272)
  - Department of Finance (457)
- Kulliyyah of Engineering (11262)
  - Department of Biotechnology Engineering (2155)
  - Department of Electrical and Computer Engineering (2526)
  - Department of Manufacturing and Materials Engineering (1779)
  - Department of Mechanical Engineering (1454)
  - Department of Mechatronics Engineering (1258)
  - Department of Science (592)
  - Department of Civil Engineering (126)
- Kulliyyah of Information and Communication Technology (3556)
  - Department of Computer Science (1153)
  - Department of Information System (1254)
  - Department of Library & Information Science (268)
- Kulliyyah of Islamic Revealed Knowledge and Human Sciences (8702)
  - Department of Arabic Language and Literature (1361)
  - Department of Communication (515)
  - Department of English Language & Literature (631)
  - Department of Fiqh and Usul al-Fiqh (959)
  - Department of General Studies (670)
  - Department of History & Civilization (384)
  - Department of Political Science (527)
  - Department of Psychology (457)
  - Department of Qur’an and Sunnah (754)
  - Department of Sociology & Anthropology (345)
  - Department of Usul al-Din and Comparative Religion (799)
  - Department of Fundamental and Inter-Disciplinary Studies (Effective: 5th Feb 2014) (233)
- Kulliyyah of Languages and Management (578)
- Kulliyyah of Medicine (3783)
  - Department of Anaesthesiology & Intensive Care (187)
  - Department of Basic Medical (634)
  - Department of Community Health & Family Medicine (75)
  - Department of Community Medicine (Effective: 1st January 2011) (334)
  - Department of Department of Orthopaedics, Traumatology & Rehabilitation (550)
  - Department of Family Medicine (Effective: 1st January 2011) (512)
  - Department of Internal Medicine (410)
  - Department of Obstetric & Gynecology (189)
  - Department of Ophthalmology (66)
  - Department of Otolaryngology - Head and Neck Surgery (127)
  - Department of Paediatrics (91)
  - Department of Psychiatry (266)
  - Department of Radiology (202)
  - Department of Surgery (254)
  - IIUM Fertility Centre (5)
  - Department of Pathology & Lab Medicine (91)
- Kulliyyah of Nursing (796)
  - Department of Basic Medical Sciences for Nursing (111)
  - Department of Critical Care Nursing (169)
  - Department of Medical Surgical Nursing (137)
  - Department of Professional Nursing Studies (84)
  - Department of Special Care Nursing (129)
- Kulliyyah of Pharmacy (2021)
  - Department of Basic Medical Sciences (201)
  - Department of Pharmaceutical Chemistry (564)
  - Department of Pharmaceutical Technology (661)
  - Department of Pharmacy Practice (370)
- Kulliyyah of Science (3654)
  - Department of Biomedical Science (109)
  - Department of Biotechnology (930)
  - Department of Chemistry (245)
  - Department of Computational and Theoretical Sciences (674)
  - Department of Marine Science (321)
  - Department of Physics (484)
  - Department of Plant Science (147)
  - Institute of Oceanography and Maritime Studies (295)
- Centre for Islamisation (CENTRIS) (5)
- Centre for Malay World & Islamic Civilisation (4)
- Office of the Rector (117)
- Research Management Centre (18)