Drahaman, Siti Marhamah and Nordin, Noor Faizul Hadry and Mohd Salleh, Hamzah and Ahmad Tajuddin, Husna (2025) In silico characterizations of degradative enzyme from landfill leachate metagenome for potential polychlorinated biphenyl (PCB) bioremediation. Chemical and Natural Resources Engineering Journal, 9 (2). pp. 14-30. E-ISSN 2637-0719
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Abstract
The characterization of enzyme structure and function was essential for understanding biochemical pathways and developing effective biotechnological applications, particularly in environmental bioremediation. Traditional experimental methods for protein analysis were often labor-intensive and limited by the inability to culture certain microorganisms. In this study, an in silico approach was employed to predict the structure and function of a putative degradative enzyme identified from metagenomic analysis of landfill leachate. Using a combination of bioinformatics tools, including sequence alignment, domain annotation, secondary structure prediction and three-dimensional (3D) structural modeling, the target enzyme was analyzed for its catalytic potential and stability. Conserved motifs and active sites were identified, suggesting its involvement in the degradation of xenobiotic compounds such as polychlorinated biphenyls (PCBs). The 3D structure model revealed a typical fold associated with oxygenase or dehydrogenase activities, with predicted metal-binding sites critical for catalyses. These findings demonstrate the power of computational methods to accelerate the discovery and characterization of novel enzymes, especially from unculturable microbial communities. This approach provides a valuable foundation for future functional validation, protein engineering and the development of environmentally sustainable biocatalysts
| Item Type: | Article (Journal) |
|---|---|
| Uncontrolled Keywords: | Bioremediation, Enzyme characterization, In silico, Metagenomic |
| Subjects: | T Technology > TH Building construction > TH6014 Environmental engineering. T Technology > TP Chemical technology > TP155 Chemical engineering |
| Kulliyyahs/Centres/Divisions/Institutes (Can select more than one option. Press CONTROL button): | International Institute for Halal Research and Training (INHART) Kulliyyah of Engineering > Department of Biotechnology Engineering |
| Depositing User: | Dr Husna Ahmad Tajuddin |
| Date Deposited: | 27 Feb 2026 11:08 |
| Last Modified: | 27 Feb 2026 11:08 |
| Queue Number: | 2026-02-Q2348 |
| URI: | http://irep.iium.edu.my/id/eprint/127664 |
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