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Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems

Gunawan, Teddy Surya and Ambikairajah, Eliathamby (2012) Parallel implementation of genomic sequences classification using modified gabor wavelet transform on multicore systems. In: International Conference on Biomedical Engineering (ICoBE2012), 27-28 Feb 2012, Penang. (Unpublished)

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Abstract

High processing time is required to classify genomic sequences and to identify protein coding of a DNA sequence. While computer performance has been driven largely by decreasing the size of chips while increasing the number of transistors they contain, the current computing trend is multicore system in which two or more independent cores are integrated into a single package. This paper presents the parallel implementation of the gene and exon identification of DNA sequences using the previously developed modified Gabor wavelet transform on multicore systems. Single Program Multiple Data (SPMD) parallel paradigm will be used in the parallel implementation. Furthermore, the efficiency of the proposed algorithm will be analyzed using Amdahl’s law.

Item Type: Conference or Workshop Item (Full Paper)
Additional Information: 5588/27187
Uncontrolled Keywords: Genomic signal processing; gene prediction; SPMD; multicore system; Amdahl’s law
Subjects: T Technology > TA Engineering (General). Civil engineering (General) > TA164 Bioengineering
Kulliyyahs/Centres/Divisions/Institutes: Kulliyyah of Engineering > Department of Electrical and Computer Engineering
Depositing User: Dr Teddy Surya Gunawan
Date Deposited: 04 Jan 2013 10:53
Last Modified: 15 Feb 2013 15:40
URI: http://irep.iium.edu.my/id/eprint/27187

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