Protein coding identification using modified gabor wavelet transform on multicore system

Gunawan, Teddy Surya (2011) Protein coding identification using modified gabor wavelet transform on multicore system. In: Human BehaviourRrecognition, Identification and Computer Interaction. IIUM Press, Kuala Lumpur, pp. 334-343. ISBN 978-967-418-156-7

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Abstract

The gene identification problem, which identifies the protein-coding regions (exons) in DNA sequences through computational means, is of great importance nowadays. A DNA sequence can be divided into genes and intergenic spaces. In eukaryotic genes, these regions can be divided into two sub-regions called coding regions (exons) and non-coding regions (introns). The intergenic and intronic regions make up most of the genome. For example, in the human genome, the exonic fraction is as low as 2%. It is well known that protein-coding regions of DNA sequences tend to exhibit a period-3 pattern because of the codon structure involved in the translation of base sequences into amino acids [1-4]. Many researchers have regarded the period-3 property to be a good indicator ofgene location.

Item Type:	Book Chapter
Additional Information:	5588/21667
Uncontrolled Keywords:	protein coding identification, Modified Gabor Wavelet, Multicore systems
Subjects:	T Technology > TK Electrical engineering. Electronics Nuclear engineering > TK7800 Electronics. Computer engineering. Computer hardware. Photoelectronic devices
Kulliyyahs/Centres/Divisions/Institutes (Can select more than one option. Press CONTROL button):	Kulliyyah of Engineering > Department of Electrical and Computer Engineering
Depositing User:	Prof. Dr. Teddy Surya Gunawan
Date Deposited:	03 Sep 2012 09:43
Last Modified:	03 Sep 2012 09:44
URI:	http://irep.iium.edu.my/id/eprint/21667

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